generate.data

A <code>data.frame</code> with information about genomic coordinates of probes 
  (chromosome and position) in the first two columns. Subsequent columns contain probe 
  measurements of individual samples.

data

Information that can be used to assign probes to one of two classes. Either a 
  logical vector or the name of a GFF file. In the later case all probes in annotated regions are 
  considered to be &#145;positive&#146;.

group

Indicates how many positive regions should be generated for each 
  observation sequence. The actual number for each sequence is sampled uniformly from 
  the indicated range of values.

pos.range

Number of observation sequences to generate.

num.seq

Gap between probes. Used to generate artificial probe coordinates.

split.gap

min.len


  Generate simulated data based on real data and the results of a previous analysis.


utilities

datagen

Methods and classes to build HMMs
that are suitable for the analysis of ChIP-chip data. The
provided parameter estimation methods include the Baum-Welch
algorithm and Viterbi training as well as a combination of
both.

generate.data: Generate Simulated Dataset

Description

Usage

Arguments

Value