initialize,contHMM-method

new,contHMM-method

A character string specifying the class of the object to be created. In this case "contHMM".

Class

A list with one object of class <code>discDist</code> for each state of the model. These are used as transition probabilities.

transition

A list with one object of class <code>contDist</code> for each state of the model. These are used as emission distributions.

emission

An object of class <code>discDist</code> or <code>NULL</code>. This is used as the initial state distribution.

init


 Objects of class <code>contHMM</code> are created by calling 
 <code>new("contHMM", transition, emission, init)</code>.


methods

initializeHMM-methods

Methods and classes to build HMMs
that are suitable for the analysis of ChIP-chip data. The
provided parameter estimation methods include the Baum-Welch
algorithm and Viterbi training as well as a combination of
both.

Peter Humburg

tileHMM

Hidden Markov Models for ChIP-on-Chip Analysis

initializeHMM-methods function

<dl> <dt>.Object = "contHMM"</dt><dd>Creates an object of class <code>contHMM</code></dd> </dl> 

initializeHMM-methods: Generate Objects of Class 'hmm'

Description

Usage

Arguments

Methods

Details

See Also