Set data.frame extended return columns toggle
After consolidation, remove consolidated fragments of a TileDB Array
datatype,tiledb_attr-method
Return the tiledb_attr
datatype
as.data.frame.tiledb_config
Convert a tiledb_config
object to a R data.frame
Retrieves the dimension of the tiledb_dim domain
Retrieve the tiledb_config
object from the tiledb_ctx
Create a ‘batched’ query object
Check ‘batched’ query for completion
Convert a tiledb_config
object to a R vector
dimensions,tiledb_array_schema-method
Returns a list of tiledb_dim
objects associated with the tiledb_array_schema
dimensions,tiledb_domain-method
Returns a list of the tiledb_domain dimension objects
datatype,tiledb_dim-method
Return the tiledb_dim
datatype
cell_order,tiledb_array_schema-method
Returns the cell layout string associated with the tiledb_array_schema
attrs,tiledb_array_schema,numeric-method
Returns a tiledb_attr
object associated with the tiledb_array_schema
with a given index
datatype,tiledb_domain-method
Returns the tiledb_domain TileDB type string
Run a ‘batched’ query
filter_list<-,tiledb_attr-method
Sets the TileDB Filter List for the TileDB Attribute object
raw_dump,tiledb_attr-method
Raw display of an attribute object
raw_dump,tiledb_array_schema-method
Raw display of an array schema object
return.data.frame,tiledb_array-method
Retrieve data.frame return toggle
is.integral,tiledb_domain-method
Returns TRUE is tiledb_domain is an integral (integer) domain
filter_list,tiledb_attr-method
Returns the TileDB Filter List object associated with the given TileDB Attribute
filter_list,tiledb_dim-method
Returns the TileDB Filter List object associated with the given TileDB Dimension
Returns TRUE if the tiledb_dim is anonymous
Check a schema for a given attribute name
Retrieve selected_ranges values for the array
Set matrix return toggle
Retrieve data.frame extended returns columns toggle
domain,tiledb_array_schema-method
Returns the tiledb_domain
object associated with a given tiledb_array_schema
show,tiledb_filter-method
Prints a filter object
show,tiledb_domain-method
Prints a domain object
Prints a tiledb_array object
Print a TileDB Array Metadata object
Retrieve query_statistics toggle
Returns TRUE if the tiledb_dim is anonymous
Set query_condition object for the array
Retrieve query_layout values for the array
Look up TileDB type corresponding to the type of an R object
Set query_statistics toggle
Retrieve return_as conversion preference
Return the tiledb_dim
domain
Retrieve return_as conversion preference
Retrieve matrix return toggle
Constructs a tiledb_array object backed by a persisted tiledb array uri
Retrieve the dimension (domain extent) of the domain
An S4 class for a TileDB Array
Open a TileDB Array at Timestamp
schema,tiledb_array-method
Return a schema from a tiledb_array object
Open a TileDB Array
tiledb_array_schema_set_enumeration_empty
Add an empty Enumeration to a Schema
Create (or return) a TileDB sparse array
Generic Methods
Set selected_points return values for the array
tiledb_array_schema_set_coords_filter_list
Set a Filter List for Coordinate of a TileDB Schema
tdb_collect,tiledb_array-method
Collect the query results to finalize piped expression
tiledb_attribute_get_cell_size
Get the TileDB Attribute cell size
Constructs a tiledb_attr
object
filter_list,tiledb_array_schema-method
Returns the offsets and coordinate filter_lists associated with the tiledb_array_schema
filter_list<-,tiledb_dim-method
Sets the TileDB Filter List for the TileDB Dimension object
An S4 class for a TileDB configuration
tiledb_attribute_set_nullable
Set the TileDB Attribute Nullable flags
Create a TileDB array from an R matrix, or return an R matrix
is.sparse,tiledb_array_schema-method
Returns TRUE if the tiledb_array_schema is sparse, else FALSE
Limit TileDB core use to a given number of cores
show,tiledb_config-method
Prints the config object to STDOUT
save_allocation_size_preference
Store allocation size preference
Retrieve selected_points values for the array
Create a TileDB dense or sparse array from a given data.frame
Object
nfilters,tiledb_filter_list-method
Returns the filter_list's number of filters
Prints a dimension object
tiledb_config_as_built_show
Display the 'AsBuilt' JSON string
Return the tiledb_attr
name
Return the tiledb_dim
name
tdb_filter,tiledb_array-method
Filter from array for query via logical conditions
Create a 'tiledb_query_condition' object from an expression
Set array return toggle
raw_dump,tiledb_domain-method
Raw display of a domain object
Retrieve array return toggle
return.data.frame<-,tiledb_array-method
Set data.frame return toggle
Prints an attribute object
show,tiledb_array_schema-method
Prints an array schema object
[,tiledb_config,ANY-method
Gets a config parameter value
Load a saved tiledb_config
file from disk
tiledb_array_get_non_empty_domain_from_index
Get the non-empty domain from a TileDB Array by index
Map from TileDB type to R datatype
Return context statistics as a JSON string
Retrieve query_condition value for the array
Set query_layout return values for the array
Returns logical value whether the array schema allows duplicate values or not.
This is only valid for sparse arrays.
tiledb_array_get_non_empty_domain_from_name
Get the non-empty domain from a TileDB Array by name
Retrieve schema capacity (for sparse fragments)
tiledb_filestore_buffer_import
Import size bytes from a string into a TileDB Filestore
Returns the type of the filter used
Return ‘batched’ status
tdb_select,tiledb_array-method
Select attributes from array for query
tiledb_fragment_info-class
An S4 class for a TileDB fragment info object
tiledb_filestore_buffer_export
Export from a TileDB Filestore to a character variable
Set strings_as_factors return toggle
Set selected_ranges return values for the array
[,tiledb_filter_list,ANY-method
Returns the filter at given index
Return the tiledb_dim
tile extent
Retrieve strings_as_factors conversion toggle
save_return_as_preference
Store object conversion preference
tile_order,tiledb_array_schema-method
Returns the tile layout string associated with the tiledb_array_schema
(Deprecated) Allocate (or Release) Arrow Array and Schema Pointers
An S4 class for a TileDB attribute
[,tiledb_array,ANY-method
Returns a TileDB array, allowing for specific subset ranges.
tiledb - Interface to the TileDB Storage Manager API
tiledb_array_apply_aggregate
Run an aggregate query on the given (sparse) array and attribute
Close a TileDB Array
Check the schema for correctness
tiledb_attribute_has_enumeration
Test if TileDB Attribute has an Enumeration
tiledb_attribute_is_ordered_enumeration_ptr
Check if TileDB Attribute Enumeration is Ordered
An S4 class for a TileDB context
Creates a tiledb_ctx
object
Delete a TileDB Array Metadata object given by key
Creates a new TileDB array given an input schema.
Sets toggle whether the array schema allows duplicate values or not.
This is only valid for sparse arrays.
Sets the schema capacity (for sparse fragments)
tiledb_array_schema_evolution-class
An S4 class for a TileDB ArraySchemaEvolution object
Return a schema from a URI character value
tiledb_array_schema_version
Check the version of the array schema
tiledb_array_is_homogeneous
Check for Homogeneous Domain
tiledb_array_upgrade_version
Upgrade an Array to the current TileDB Array Schema Format
tiledb_attribute_is_variable_sized
Check whether TileDB Attribute is variable-sized
Set the number of scalar values per attribute cell
tiledb_config_as_built_json
Return the 'AsBuilt' JSON string
Creates a tiledb_config
object
Constructs a tiledb_dim
object
Test if TileDB Array is open
tiledb_fragment_info_get_size
Return a fragment info fragment size for a given fragment index
tiledb_fragment_info_get_num
Return a fragment info number of fragments
tiledb_array_schema-class
An S4 class for the TileDB array schema
cell_val_num,tiledb_dim-method
Return the number of scalar values per dimension cell
An S4 class for a TileDB filter
Constructs a tiledb_array_schema
object
Constructs a tiledb_filter
object
An S4 class for a TileDB dimension object
tiledb_array_schema_evolution_array_evolve
Evolve an Array Schema
show,tiledb_filter_list-method
Prints a filter_list object
Display the TileDB Group object to STDOUT
tiledb_array_delete_fragments
Delete fragments written between the start and end times given
tiledb_array_schema_evolution_add_enumeration_empty
Evolve an Array Schema by adding an empty Enumeration
Constructs a tiledb_fragment_info
object
tiledb_fragment_info_dense
Return if a fragment info index is dense
Return all TileDB Array Metadata objects as a named list
tiledb_array_schema_evolution_add_enumeration
Add an Enumeration to a TileDB Array Schema Evolution object
tiledb_array_schema_evolution_drop_attribute
Drop an attribute given by name from a TileDB Array Schema Evolution object
tiledb_array_schema_set_offsets_filter_list
Set a Filter List for Variable-Sized Offsets of a TileDB Schema
tiledb_array_schema_set_validity_filter_list
Set a Filter List for Validity of a TileDB Schema
[<-,tiledb_array,ANY,ANY,ANY-method
Sets a tiledb array value or value range
[<-,tiledb_config,ANY,ANY,ANY-method
Sets a config parameter value
tiledb_array_has_enumeration
Check for Enumeration (aka Factor aka Dictionary)
Retrieve a TileDB context object from the package cache
tiledb_array_is_heterogeneous
Check for Heterogeneous Domain
Save a tiledb_config
object ot a local text file
Unset a TileDB Config parameter to its default value
tiledb_filestore_uri_export
Export a file from a TileDB Filestore
tiledb_filestore_uri_import
Import a file into a TileDB Filestore
An S4 class for a TileDB domain
Constructs a tiledb_domain
object
tiledb_group_has_metadata
Checks for Metadata in a TileDB Group
tiledb_group_get_metadata_from_index
Accesses Metadata by Index from a TileDB Group
Set the filter_list's max_chunk_size
Set the option for a filter
tiledb_fragment_info_get_cell_num
Return a fragment info number of cells for a given fragment index
tiledb_fragment_info_dump
Dump the fragment info to console
Test if TileDB Array has Metadata
tiledb_fragment_info_get_version
Return a fragment info version for a given fragment index
Dumps internal TileDB statistics as JSON to a string
Query if a TileDB backend is supported
tiledb_array_schema_evolution
Creates a 'tiledb_array_schema_evolution' object
tiledb_array_schema_evolution_add_attribute
Add an Attribute to a TileDB Array Schema Evolution object
tiledb_group_get_all_metadata
Return all Metadata from a TileDB Group
Retrieve the cached status of the last finalized query
Retrieve a TileDB VFS object from the package environment and cache
An S4 class for a TileDB Group object
Return a TileDB Array Metadata object given by key
tiledb_group_delete_metadata
Deletes Metadata from a TileDB Group
tiledb_fragment_info_has_consolidated_metadata
Return if a fragment info index has consolidated metadata
tiledb_attribute_set_enumeration_name
Set a TileDB Attribute Enumeration Name
tiledb_attribute_set_fill_value
Set the fill value for a TileDB Attribute
Set a range for a given query
tiledb_query_add_range_with_type
Set a range for a given query, also supplying type
tiledb_query_set_buffer_ptr
Assigns to a Query buffer for a given attribute
tiledb_array_schema_evolution_drop_enumeration
Drop an Enumeration given by name from a TileDB Array Schema Evolution object
tiledb_array_schema_evolution_extend_enumeration
Extend an Evolution via Array Schema Evolution
tiledb_group_put_metadata
Write Metadata to a TileDB Group
tiledb_query_get_buffer_char
Retrieve content from a Query character buffer
Open a TileDB Group
tiledb_query_create_buffer_ptr
Allocate and populate a Query buffer for a given object of a given data type.
tiledb_query_submit_async
Submit TileDB Query asynchronously without a callback returning immediately
tiledb_query_create_buffer_ptr_char
Allocate and populate a Query buffer for writing the given char vector
tiledb_query_condition_set_use_enumeration
Enable use of enumeration in query condition
Return (uncompressed) TileDB Filestore size
tiledb_filestore_schema_create
Create an array schema from a given URI with schema
Returns the filter's option
An S4 class for a TileDB filter list
tiledb_fragment_info_get_non_empty_domain_index
Return a fragment info non-empty domain from index
tiledb_group_remove_member
Remove Member from TileDB Group
Removes a TileDB resource
Get a TileDB Config from a TileDB Group
Return query context object
tiledb_fragment_info_get_timestamp_range
Return a fragment info timestamp range for a given fragment index
Return a TileDB Group query type
tiledb_ndim,tiledb_dim-method
Returns the number of dimensions for a tiledb domain object
tiledb_fragment_info_get_to_vacuum_num
Return the number of fragment info elements to be vacuumed
tiledb_group_metadata_num
Returns Number of Metadata Objects a TileDB Group
tiledb_group_get_metadata
Accesses Metadata from a TileDB Group
tiledb_query_condition_combine
Combine two 'tiledb_query_condition' objects
Creates a tiledb_vfs
object
List TileDB resources at a given root URI path
tiledb_fragment_info_get_non_empty_domain_name
Return a fragment info non-empty domain from name
Return TileDB Query type
Store a TileDB VFS object in the package environment
Move a TileDB resource to new uri path
tiledb_query_get_fragment_num
Retrieve the Number of Fragments for Query
tiledb_ndim,tiledb_array_schema-method
Return the number of dimensions associated with the tiledb_array_schema
Dump the TileDB Group to String
Set TileDB Query buffer
Succinctly describe a TileDB array schema
Return VFS Directory Listing
Submit TileDB Query
Get all Dimension and Attribute Types
Close a TileDB VFS Filehandle
Gets internal TileDB statistics as JSON string
tiledb_fragment_info_sparse
Return if a fragment info index is sparse
tiledb_query_export_buffer
Export Query Buffer to Pair of Arrow IO Pointers
tiledb_query_apply_aggregate
Run an aggregate oprtation on the given query attribute
tiledb_query_alloc_buffer_ptr_char
Allocate a Query buffer for reading a character attribute
An S4 class for a TileDB VFS object
Creates a 'tiledb_query_condition' object
tiledb_query_get_range_num
Retrieve the number of ranges for a query dimension
Return the TileDB object type string of a TileDB resource
tiledb_query_get_fragment_timestamp_range
Retrieve the timestamp range for a given Query Fragment
Touch a VFS URI Resource
tiledb_query_get_buffer_ptr
Retrieve content from a Query buffer
Test for VFS File
Return a fragment info URI given its index
Close a TileDB Group
Copy a file to VFS
Unserialize an R Object from a VFS-accessible URI
tiledb_attribute_get_enumeration
Get the TileDB Attribute Enumeration
tiledb_attribute_get_fill_value
Get the fill value for a TileDB Attribute
Return the number of scalar values per attribute cell
tiledb_attribute_get_nullable
Get the TileDB Attribute Nullable flag value
tiledb_ctx_set_default_tags
Sets default context tags
Retrieve the query range for a query dimension and range index
tiledb_schema_get_enumeration_status
Get Dimension or Attribute Status
Set TileDB Query layout
Sets a string:string "tag" on the Ctx
tiledb_query_set_subarray
Set subarray for TileDB Query object
Finalize TileDB Query
Check for VFS Bucket
tiledb_domain_get_dimension_from_name
Returns a Dimension indicated by name for the given TileDB Domain
tiledb_domain_get_dimension_from_index
Returns a Dimension indicated by index for the given TileDB Domain
tiledb_query_get_fragment_uri
Retrieve the URI for a given Query Fragment
Get TileDB Query layout
Remove a VFS Bucket
Disable internal TileDB statistics counters
Recursively list objects from given URI
Write to a TileDB VFS Filehandle
Return VFS Directory Size
Get all Dimension and Attribute Names
Create a TileDB Group at the given path
tiledb_schema_get_dim_attr_status
Get Dimension or Attribute Status
Store a TileDB context object in the package cache
Apply a Subarray to a Query
Get a Member (Description) by Index from TileDB Group
Return count of TileDB Array Metadata objects
tiledb_group_member_count
Get Member Count from TileDB Group
tiledb_ndim,tiledb_domain-method
Returns the number of dimensions of the tiledb_domain
Enable internal TileDB statistics counters
tiledb_query_result_buffer_elements
Get TileDB Query result buffer element size
Return the error message for a given context
tiledb_domain_has_dimension
Check a domain for a given dimension name
Empty a VFS Bucket
Move (or rename) a VFS Directory
The version of the libtiledb library
Move (or rename) a VFS File
Return query statistics as a JSON string
Read from a TileDB VFS Filehandle
Get TileDB Query status
An S4 class for a TileDB Subarray
Open a TileDB VFS Filehandle for reading or writing
Create a VFS Bucket
Creates a 'tiledb_query' object
An S4 class for a TileDB Query object
Dumps internal TileDB statistics to file or stdout
Create a VFS Directory
tiledb_query_condition-class
An S4 class for a TileDB QueryCondition object
tiledb_query_buffer_alloc_ptr
Allocate a Query buffer for a given type
Sync a TileDB VFS Filehandle
Return VFS File Size
Serialize an R Object to a VFS-accessible URI
tiledb_query_result_buffer_elements_vec
Get TileDB Query result buffer element size pair as vector
Constructs a tiledb_filter_list
object
Returns the filter_list's max_chunk_size
Print internal TileDB statistics
Constructs a tiledb_subarray
object from a TileDB Query
tiledb_fragment_info_get_non_empty_domain_var_index
Return a fragment info non-empty domain variable from index
tiledb_fragment_info_get_non_empty_domain_var_name
Return a fragment info non-empty domain variable from name
tiledb_fragment_info_get_to_vacuum_uri
Return fragment info URI of the to be vacuumed index
Return a TileDB Group URI
tiledb_fragment_info_get_unconsolidated_metadata_num
Return fragment info number of unconsolidated metadata
Test if TileDB Group is open
Creates a 'tiledb_group' object
Add Member to TileDB Group
Recursively discover TileDB resources at a given root URI path
Test if a Named Group is Using a Relative URI
Set a TileDB Config for a TileDB Group
tiledb_query_condition_init
Initialize a 'tiledb_query_condition' object
Store an object in TileDB Array Metadata under given key
tiledb_query_get_est_result_size
Retrieve the estimated result size for a query and attribute
tiledb_query_set_buffer_ptr_char
Assign a buffer to a Query attribute
tiledb_query_condition_create
Create a query condition for vector 'IN' and 'NOT_IN' operations
tiledb_query_get_est_result_size_var
Retrieve the estimated result size for a query and variable-sized attribute
tiledb_query_set_condition
Set a query combination object for a query
tiledb_query_import_buffer
Import to Query Buffer from Pair of Arrow IO Pointers
tiledb_query_get_range_var
Retrieve the query range for a variable-sized query dimension and range index
Print internal TileDB statistics as JSON
tiledb_vfs_is_empty_bucket
Check for empty VFS Bucket
Remove a VFS Directory
Reset internal TileDB statistics counters
Test for VFS Directory
Remove a VFS File
Consolidate fragments of a TileDB Array
attrs<-,tiledb_array-method
Selects attributes for the given TileDB array
attrs,tiledb_array_schema,character-method
Returns a tiledb_attr
object associated with the tiledb_array_schema
with a given name.
attrs,tiledb_array_schema,ANY-method
Returns a list of all tiledb_attr
objects associated with the tiledb_array_schema
attrs,tiledb_array,ANY-method
Retrieve attributes from tiledb_array
object
Retrieve the dimension (domain extent) of the domain
Describe a TileDB array schema via code to create it
Set datetimes_as_int64 toggle
Retrieve datetimes_as_int64 toggle