searchSpace: Generate search space

Description

A function to generate the search space for sffs

Usage

searchSpace(drug_number, k_set, profile_data, y_actual)

Arguments

drug_number

an integer to specify the number of drugs

k_set

a vector to specify the selected target set

profile_data

drug-target interaction data

y_actual

the drug sensitivity data

Value

IM_d: search space of identical sets
IM_superset: search space of supersets
IM_subset: search space of subsets

Examples

Run this code

data(tyner_interaction_binary)
data(tyner_sensitivity)
num<-length(tyner_sensitivity[,1])
k_set<-rep(0, dim(tyner_interaction_binary)[2])
k_set[1]<-1
space<-searchSpace(num, k_set, tyner_interaction_binary, tyner_sensitivity[,1])

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