geo_download

download gse data and get informations

The Gene Expression Omnibus (<https://www.ncbi.nlm.nih.gov/geo/>) and The Cancer Genome Atlas (<https://portal.gdc.cancer.gov/>) are widely used medical public databases. Our platform integrates routine analysis and visualization tools for expression data to provide concise and intuitive data analysis and presentation.

Xiaojie Sun

tinyarray

Expression Data Analysis and Visualization

geo_download function

<dl><dt>gse</dt>
<dd>gse assession number</dd>
<dt>by_annopbrobe</dt>
<dd>download data by geoquery or annoprobe</dd>
<dt>simpd</dt>
<dd>get simplified pdata,drop out columns with all same values</dd>
<dt>colon_remove</dt>
<dd>whether to remove duplicated columns with colons</dd>
<dt>destdir</dt>
<dd>The destination directory for data downloads.</dd>
<dt>n</dt>
<dd>For data with more than one ExpressionSet, specify which one to analyze</dd></dl>

Arguments

Author

geo_download — geo_download

<dl>

<dt>gse</dt>
<dd>gse assession number</dd>


<dt>by_annopbrobe</dt>
<dd>download data by geoquery or annoprobe</dd>


<dt>simpd</dt>
<dd>get simplified pdata,drop out columns with all same values</dd>


<dt>colon_remove</dt>
<dd>whether to remove duplicated columns with colons</dd>


<dt>destdir</dt>
<dd>The destination directory for data downloads.</dd>


<dt>n</dt>
<dd>For data with more than one ExpressionSet, specify which one to analyze</dd>

</dl>

geo_download: geo_download

Description

Usage

Value

Arguments

Author

See Also