get_count_txt

get RNA-seq count file from GEO database

The Gene Expression Omnibus (<https://www.ncbi.nlm.nih.gov/geo/>) and The Cancer Genome Atlas (<https://portal.gdc.cancer.gov/>) are widely used medical public databases. Our platform integrates routine analysis and visualization tools for expression data to provide concise and intuitive data analysis and presentation.

Xiaojie Sun

tinyarray

Expression Data Analysis and Visualization

get_count_txt function

<dl><dt>gse</dt>
<dd>gse assession number</dd>
<dt>destdir</dt>
<dd>The destination directory for data downloads.</dd>
<dt>download</dt>
<dd>download the txt file or not</dd></dl>

Arguments

Author

get count from GEO — get_count_txt

<dl>

<dt>gse</dt>
<dd>gse assession number</dd>


<dt>destdir</dt>
<dd>The destination directory for data downloads.</dd>


<dt>download</dt>
<dd>download the txt file or not</dd>

</dl>

get_count_txt: get count from GEO

Description

Usage

Value

Arguments

Author

See Also

Examples