get_count_txt

get RNA-seq count file from GEO database

A toolkit for microarray and RNA-seq data analysis, including annotation conversion, differential expression, enrichment, survival analysis, and visualization.

Xiaojie Sun

tinyarray

Expression Data Analysis and Visualization

get_count_txt function

<dl><dt>gse</dt>
<dd>GEO accession number or a path to a cached `.rds` or `.RData`
file containing an `ExpressionSet` or a list of `ExpressionSet` objects</dd>
<dt>destdir</dt>
<dd>The destination directory for data downloads</dd>
<dt>download</dt>
<dd>download the txt file or not</dd></dl>

Arguments

Author

get count from GEO — get_count_txt

<dl>

<dt>gse</dt>
<dd>GEO accession number or a path to a cached `.rds` or `.RData`
file containing an `ExpressionSet` or a list of `ExpressionSet` objects</dd>


<dt>destdir</dt>
<dd>The destination directory for data downloads</dd>


<dt>download</dt>
<dd>download the txt file or not</dd>

</dl>

get_count_txt: get count from GEO

Description

Usage

Value

Arguments

Author

See Also

Examples