tlsR (version 0.1.2)

detect_tic: Detect Tumor-Infiltrating T-cell Clusters (TIC)

Description

Uses HDBSCAN approximation on T cells outside TLS regions to find TIC.

Value

Modified data frame for the sample (invisibly).

Arguments

sample

Character. Sample name.

ldata

Optional list.

Examples

data(toy_ldata)
ldata <- detect_TLS("ToySample", k = 30, ldata = toy_ldata)  # Need TLS first
ldata <- detect_tic("ToySample", ldata = ldata)
table(ldata[["ToySample"]]$tcell_cluster_hdbscan)