check_topology

a tibble with two columns,
named <code>name</code> for a protein's name and <code>topology</code>,
for its predicted topology (e.g. <code>ooooMMMMiiiii</code>).

topology

Check if the argument is of the same type as a predicted topology,
as can be created with <a rd-options="" href="/link/run_tmhmm?package=tmhmm&version=1.3" data-mini-rdoc="tmhmm::run_tmhmm">run_tmhmm</a>.
Will <a rd-options="" href="/link/stop?package=tmhmm&version=1.3" data-mini-rdoc="tmhmm::stop">stop</a> if not.


Predicting the topology of membrane proteins is part of
the field of computational biology.
'TMHMM' is a program to predict transmembrane helices in proteins.
'TMHMM' can be called from a website and/or locally using Bash.
This package allows to install and call TMHMM from R and parse its results.

Richel Bilderbeek

tmhmm

Interface to TMHMM

check_topology function

Check if the argument is of the same type as a predicted topology,
as can be created with <a rd-options='' href='run_tmhmm'>run_tmhmm</a>.
Will <a rd-options='' href='stop'>stop</a> if not.

check_topology: Check if the topology is valid.

Description

Usage

Arguments

Value