tmhmm (version 1.3)

run_tmhmm: Run TMHMM

Description

Run TMHMM

Usage

run_tmhmm(fasta_filename, folder_name = get_default_tmhmm_folder())

Arguments

fasta_filename

path to a FASTA file

folder_name

superfolder of TMHMM. The superfolder's name is /home/[user_name]/.local/share by default, as can be obtained by get_default_tmhmm_folder

Value

a character vector with the locatome

Examples

# NOT RUN {
if (is_tmhmm_installed()) {
  fasta_filename <- system.file("extdata", "tmhmm.fasta", package = "tmhmm")
  locatome <- run_tmhmm(fasta_filename)
  message(locatome, sep = "\n")
}
# }