tmhmm (version 1.3)

tmhmm: tmhmm: estimate the topoplogy of membrane proteins

Description

Each amino acid that is part a membrane protein can be located either in the cytosol, membrane or at the exterior. 'tmhmm' estimate this topology

Examples

# NOT RUN {
if (is_tmhmm_installed()) {
  fasta_filename <- system.file("extdata", "tmhmm.fasta", package = "tmhmm")
  locatome <- run_tmhmm(fasta_filename)

  # Show as text
  message(locatome, sep = "\n")

  # Show as data frame
  message(locatome_to_df(locatome))

  # Show as plot
  plot_locatome(locatome)
}
# }