tmod (version 0.19)

showGene: A combined beeswarm / boxplot

Description

A combined beeswarm / boxplot

Usage

showGene(data, group, main = "", pch = 19, xlab = "",
  ylab = "log2 expression", las = 2, pwcol = NULL, ...)

Arguments

data

a vector of numeric values to be plotted

group

factor describing the groups

main

title of the plot

pch

character to plot the points

xlab,ylab

x and y axis labels

las

see par()

pwcol

colors of the points (see beeswarm)

...

any additional parameters to be passed to the beeswarm command

Details

This is just a simple wrapper around the beeswarm() and boxplot() commands.

Examples

data(Egambia)
E <- as.matrix(Egambia[,-c(1:3)])
showGene(E["20799",], rep(c("CTRL", "TB"), each=15))