tmod (version 0.19)

tmod-class: An S4 class that stores modules.

Description

An S4 class that stores modules.

Gene expression module data

Details

This data set contains the module annotations (tmod$MODULES), gene to module (tmod$GENES2MODULES) and module to gene (tmod$MODULES2GENES) mappings and a gene list (tmod$GENES).

tmod$MODULES and tmod$GENES are data frames, while tmod$MODULES2GENES and tmod$GENES2MODULES are lists with, respectively, module and gene identifiers as names.

Examples

# list of first 10 modules
data(tmod)
tmod
tmod$MODULES[1:10, ]
tmod[1:10]