showModule: Select genes belonging to a module from a data frame
Description
Select genes belonging to a module from a data frame or vector
Usage
showModule(x, genes, module, mset = "all", extra = TRUE)
Arguments
x
a data frame or a vector
genes
a character vector with gene IDs
module
a single character value, ID of the module to be shown
mset
Module set to use; see "tmodUtest" for details
extra
If true, additional information about the features will be shown
Details
showModule filters a data frame or a vector such that only genes from a module are
shown. Use it, for example, to show a subset of topTable result from
limma in order to see which genes from a module are significantly
regulated. In essence, this is just a wrapper around "subset()".