new_layout_config: Plot Layout Configuration Class

Description

S3 class for configuring plot layout including dimensions, margins, grids and coordinate systems.

Usage

new_layout_config(
  width = 8,
  height = 8,
  dpi = 300,
  aspect_ratio = 1,
  show_grid = TRUE,
  grid_type = "major",
  grid_color = "grey80",
  grid_linetype = "dashed",
  show_axis = TRUE,
  axis_lines = TRUE,
  plot_margin = margin(1, 1, 1, 1, "cm"),
  coord_type = "fixed",
  background_color = "white",
  panel_background_color = "white",
  panel_border = TRUE,
  panel_border_color = "black",
  save_plot = FALSE,
  save_format = "png",
  reverse_x = 1,
  reverse_y = 1,
  x_limits = NULL,
  y_limits = NULL,
  arrow_plot_threshold = 0.1
)

Value

An S3 object of class layout_config, which is a list containing the specified configuration parameters for plot layout.

Arguments

width: Plot width in inches
height: Plot height in inches
dpi: Plot resolution
aspect_ratio: Plot aspect ratio
show_grid: Show plot grid
grid_type: Grid type ("none", "major", "minor", "both")
grid_color: Grid color
grid_linetype: Grid line type
show_axis: Show axes
axis_lines: Show axis lines
plot_margin: Plot margins in cm
coord_type: Coordinate type ("fixed", "equal", "flip", "polar")
background_color: Plot background color
panel_background_color: Panel background color
panel_border: Show panel border
panel_border_color: Panel border color
save_plot: Logical. Whether to save the plot to a file.
save_format: Plot save format ("png", "pdf", "svg", "eps")
reverse_x: Numeric multiplier for x-axis direction (1 or -1)
reverse_y: Numeric multiplier for y-axis direction (1 or -1)
x_limits: Numeric vector of length 2 specifying c(min, max) for x-axis. If NULL, limits are set automatically.
y_limits: Numeric vector of length 2 specifying c(min, max) for y-axis. If NULL, limits are set automatically.
arrow_plot_threshold: Threshold for velocity arrows to be drawn in the same antigenic distance unit (default: 0.10)