CD_FINNGEN

Dataset retrieved from the Finngen database (version 7) including 3147 crohn´s cases (K50) and 296,100 controls. The dataset has been filtered on variants with P &lt;1e-03.
FinnGen data are publicly available and were downloaded from https://finngen.fi.

datasets

A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.

Thorhildur Juliusdottir

topr

Create Custom Plots for Viewing Genetic Association Results

Andri Stefansson

CD_FINNGEN function

A data frame with 32,303 rows and 8 variables:<dl>
<dt>CHROM</dt>
<dd>Chromosome, written as for example chr1 or 1</dd><dt>POS</dt>
<dd>genetic position of the variant</dd><dt>REF</dt>
<dd>the reference allele</dd><dt>ALT</dt>
<dd>the alternative allele</dd><dt>P</dt>
<dd>P-value from Plink run, additive model, regression model GLM_FIRTH</dd><dt>BETA</dt>
<dd>Variant effect</dd><dt>ID</dt>
<dd>Variant identifier, e.g. rsid</dd><dt>AF</dt>
<dd>Allele frequency</dd>
</dl>

Format

Finngen r7 Crohn‘s disease (K11_CROHNS) — CD_FINNGEN

A data frame with 32,303 rows and 8 variables:<dl>
<dt>CHROM</dt>
<dd>Chromosome, written as for example chr1 or 1</dd>

<dt>POS</dt>
<dd>genetic position of the variant</dd>

<dt>REF</dt>
<dd>the reference allele</dd>

<dt>ALT</dt>
<dd>the alternative allele</dd>

<dt>P</dt>
<dd>P-value from Plink run, additive model, regression model GLM_FIRTH</dd>

<dt>BETA</dt>
<dd>Variant effect</dd>

<dt>ID</dt>
<dd>Variant identifier, e.g. rsid</dd>

<dt>AF</dt>
<dd>Allele frequency</dd>


</dl>

CD_FINNGEN: Finngen r7 Crohn‘s disease (K11_CROHNS)

Description

Usage

Arguments

Format