R2_CD_UKBB

The dataset is a subset of CD_UKBB and only includes variants above and near the IL23R gene on chromosome 1

datasets

A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.

Thorhildur Juliusdottir

topr

Create Custom Plots for Viewing Genetic Association Results

Andri Stefansson

R2_CD_UKBB function

A data frame with 329 rows and 5 variables:<dl>
<dt>CHROM</dt>
<dd>Chromosome, written as for example chr1 or 1</dd><dt>POS</dt>
<dd>genetic position of the variant</dd><dt>ID</dt>
<dd>Variant identifier, e.g. rsid</dd><dt>P</dt>
<dd>P-value from Plink run, additive model, regression model GLM_FIRTH</dd><dt>R2</dt>
<dd>variant correlation (r^2)</dd>
</dl>

Format

Example dataset including the R2 column for the locuszoom plot function — R2_CD_UKBB

A data frame with 329 rows and 5 variables:<dl>
<dt>CHROM</dt>
<dd>Chromosome, written as for example chr1 or 1</dd>

<dt>POS</dt>
<dd>genetic position of the variant</dd>

<dt>ID</dt>
<dd>Variant identifier, e.g. rsid</dd>

<dt>P</dt>
<dd>P-value from Plink run, additive model, regression model GLM_FIRTH</dd>

<dt>R2</dt>
<dd>variant correlation (r^2)</dd>


</dl>

R2_CD_UKBB: Example dataset including the R2 column for the locuszoom plot function

Description

Usage

Arguments

Format