UC_UKBB

Dataset retrieved from the UK biobank including of 5,452 UC cases (K51) and 481,862 controls. The dataset has been filtered on variants with P&lt;1e-03.

datasets

A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.

Thorhildur Juliusdottir

topr

Create Custom Plots for Viewing Genetic Association Results

Andri Stefansson

UC_UKBB function

A data frame with 45,012 rows and 8 variables<dl>
<dt>CHROM</dt>
<dd>Chromosome, written as for example chr1 or 1</dd><dt>POS</dt>
<dd>genetic position of the variant</dd><dt>REF</dt>
<dd>the reference allele</dd><dt>ALT</dt>
<dd>the alternative allele</dd><dt>ID</dt>
<dd>Variant identifier, e.g. rsid</dd><dt>P</dt>
<dd>P-value from Plink run, additive model, regression model GLM_FIRTH</dd><dt>OR</dt>
<dd>Odds Ratio</dd><dt>AF</dt>
<dd>Allele frequency</dd>
</dl>

Format

UKBB Ulcerative colitis (ICD 10 code K51) — UC_UKBB

A data frame with 45,012 rows and 8 variables<dl>
<dt>CHROM</dt>
<dd>Chromosome, written as for example chr1 or 1</dd>

<dt>POS</dt>
<dd>genetic position of the variant</dd>

<dt>REF</dt>
<dd>the reference allele</dd>

<dt>ALT</dt>
<dd>the alternative allele</dd>

<dt>ID</dt>
<dd>Variant identifier, e.g. rsid</dd>

<dt>P</dt>
<dd>P-value from Plink run, additive model, regression model GLM_FIRTH</dd>

<dt>OR</dt>
<dd>Odds Ratio</dd>

<dt>AF</dt>
<dd>Allele frequency</dd>


</dl>

UC_UKBB: UKBB Ulcerative colitis (ICD 10 code K51)

Description

Usage

Arguments

Format