get_overlapping_snps_by_pos

<code>get_overlapping_snps_by_pos()</code>
This method is deprecated and will be removed in future versions. use <code>match_by_pos</code> instead.

A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.

Thorhildur Juliusdottir

topr

Create Custom Plots for Viewing Genetic Association Results

Andri Stefansson

get_overlapping_snps_by_pos function

<dl><dt>df1</dt>
<dd>A dataframe of variants, has to contain CHROM and POS</dd>
<dt>df2</dt>
<dd>A dataframe of variants, has to contain CHROM and POS</dd>
<dt>verbose</dt>
<dd>A logical scalar (default: FALSE). Assign to TRUE to get information on which alleles are matched and which are not.</dd></dl>

Arguments

Get variants that overlap between two datasets — get_overlapping_snps_by_pos

<dl>

<dt>df1</dt>
<dd>A dataframe of variants, has to contain CHROM and POS</dd>


<dt>df2</dt>
<dd>A dataframe of variants, has to contain CHROM and POS</dd>


<dt>verbose</dt>
<dd>A logical scalar (default: FALSE). Assign to TRUE to get information on which alleles are matched and which are not.</dd>

</dl>

get_overlapping_snps_by_pos: Get variants that overlap between two datasets

Description

Usage

Value

Arguments

Examples