cell_line_fsa_list

<p>A list of fsa files read into R using trace::read_fsa() that for example data</p>

datasets

A pipeline for short tandem repeat instability analysis from fragment analysis data. Inputs of fsa files or peak tables, and a user supplied metadata data-frame. The package identifies ladders, calls peaks, identifies the modal peaks, calls repeats, then calculates repeat instability metrics (e.g. expansion index from Lee et al. (2010) <doi:10.1186/1752-0509-4-29>).

Zachariah McLean

trace

Tandem Repeat Analysis by Capillary Electrophoresis

Kevin Correia

Andrew Jiang

cell_line_fsa_list function


<div class="section" id="cell-line-fsa-list">
<h3><code>cell_line_fsa_list</code></h3><p></p><p>
</p><p>A list with 92 elements, each one being the contents of an fsa file:</p>
</div>


Format

A list of fsa files — cell_line_fsa_list


<div class='section' id='cell-line-fsa-list'>
<h3><code>cell_line_fsa_list</code></h3>


<p>A list with 92 elements, each one being the contents of an fsa file:</p>
</div>


cell_line_fsa_list: A list of fsa files

Description

Usage

Arguments

Format

`cell_line_fsa_list`