trace (version 0.6.0)

generate_trace_template: Generate a Quarto file that has the instability pipeline preset

Description

Generate a Quarto file that has the instability pipeline preset

Usage

generate_trace_template(
  file_name = NULL,
  correction = "batch",
  samples_grouped = TRUE
)

Value

A Quarto template file for repeat instability analysis

Arguments

file_name

Name of file to create

correction

select either "none", "batch" or "repeat" to indicate if the functionality for correcting repeat size using size standards across batches be included in the pipeline. See add_metadata() & call_repeats() for more info.

samples_grouped

Indicates if the functionality for grouping samples for metrics calculations should be included in the pipeline. See add_metadata() & assign_index_peaks() for more info.

Examples

if (interactive()) {
   generate_trace_template("test")
}