trace (version 0.6.0)

plot_fragments: Plot Peak Data

Description

Plots peak data from a list of fragments.

Usage

plot_fragments(
  fragments_list,
  n_facet_col = 1,
  sample_subset = NULL,
  xlim = NULL,
  ylim = NULL
)

Value

A plot object displaying the peak data.

Arguments

fragments_list

A list of fragments_repeats objects containing fragment data.

n_facet_col

A numeric value indicating the number of columns for faceting in the plot.

sample_subset

A character vector of unique ids for a subset of samples to plot

xlim

the x limits of the plot. A numeric vector of length two.

ylim

the y limits of the plot. A numeric vector of length two.

Examples

gm_raw <- trace::example_data

fragments_list <- peak_table_to_fragments(gm_raw,
  data_format = "genemapper5",
  dye_channel = "B",
  min_size_bp = 300
)

find_alleles(
  fragments_list
)

plot_fragments(fragments_list[1])