trace

trace-package

A pipeline for short tandem repeat instability analysis from fragment analysis data. Inputs of fsa files or peak tables, and a user supplied metadata data-frame. The package identifies ladders, calls peaks, identifies the modal peaks, calls repeats, then calculates repeat instability metrics (e.g. expansion index from Lee et al. (2010) tools:::Rd_expr_doi("10.1186/1752-0509-4-29")).

internal

A pipeline for short tandem repeat instability analysis from fragment analysis data. Inputs of fsa files or peak tables, and a user supplied metadata data-frame. The package identifies ladders, calls peaks, identifies the modal peaks, calls repeats, then calculates repeat instability metrics (e.g. expansion index from Lee et al. (2010) <doi:10.1186/1752-0509-4-29>).

Zachariah McLean

Tandem Repeat Analysis by Capillary Electrophoresis

Kevin Correia

Andrew Jiang

trace-package function

Maintainer: Zachariah McLean <a href="/link/zachariah.louis.mclean%40gmail.com?package=trace&version=0.6.0" data-mini-rdoc="trace::zachariah.louis.mclean@gmail.com">zachariah.louis.mclean@gmail.com</a> (<a href="https://orcid.org/0000-0002-0968-0538">ORCID</a>) [copyright holder]
Authors:<ul>
<li>Kevin Correia</li>
</ul>Other contributors:<ul>
<li>Andrew Jiang [contributor]</li>
</ul>

Author

trace: Tandem Repeat Analysis by Capillary Electrophoresis — trace-package

Maintainer: Zachariah McLean <a href='mailto:zachariah.louis.mclean@gmail.com'>zachariah.louis.mclean@gmail.com</a> (<a href='https://orcid.org/0000-0002-0968-0538'>ORCID</a>) [copyright holder]
Authors:<ul>
<li>Kevin Correia</li>
</ul>

Other contributors:<ul>
<li>Andrew Jiang [contributor]</li>
</ul>

trace-package: trace: Tandem Repeat Analysis by Capillary Electrophoresis

Description

Arguments

Author

See Also