example_data_repeat_table

<p>example_data_repeat_table is data with repeats called</p>

datasets

A pipeline for short tandem repeat instability analysis from fragment analysis data. Inputs of fsa files or peak tables, and a user supplied metadata data-frame. The package identifies ladders, calls peaks, identifies the modal peaks, calls repeats, then calculates repeat instability metrics (e.g. expansion index from Lee et al. (2010) <doi:10.1186/1752-0509-4-29>).

Zachariah McLean

trace

Tandem Repeat Analysis by Capillary Electrophoresis

Kevin Correia

Andrew Jiang

example_data_repeat_table function


<div class="section" id="example-data-repeat-table">
<h3><code>example_data_repeat_table</code></h3><p></p><p>
</p><p>A genemapper output dataframe</p>
</div>


Format

example_data_repeat_table — example_data_repeat_table


<div class='section' id='example-data-repeat-table'>
<h3><code>example_data_repeat_table</code></h3>


<p>A genemapper output dataframe</p>
</div>


example_data_repeat_table: example_data_repeat_table

Description

Usage

Arguments

Format

`example_data_repeat_table`