trace (version 1.0.0)

extract_ladder_summary: Extract ladder summary

Description

Extract a table summarizing the ladder models

Usage

extract_ladder_summary(fragments_list, sort = FALSE)

Value

a dataframe of ladder quality information

Arguments

fragments_list

a list of fragments trace objects

sort

A logical statement for if the samples should be ordered by average ladder R-squared.

Details

The ladder peaks are assigned using a custom algorithm that maximizes the fit of detected ladder peaks and given base-pair sizes. This function summarizes the R-squared values of these individual correlations.

Examples

fsa_list <- lapply(cell_line_fsa_list, function(x) x$clone())
# import data with read_fsa() to generate an equivalent list to cell_line_fsa_list
test_fragments <- trace(fsa_list, grouped = TRUE, metadata_data.frame = metadata)

  extract_ladder_summary(test_fragments, sort = TRUE)