trace (version 1.0.0)

plot_ladders: Plot ladder

Description

Plot the ladder signal

Usage

plot_ladders(
  fragments_list,
  n_facet_col = 1,
  sample_subset = NULL,
  xlim = NULL,
  ylim = NULL
)

Value

a plot of ladders

Arguments

fragments_list

A list of fragments objects containing fragment data.

n_facet_col

A numeric value indicating the number of columns for faceting in the plot.

sample_subset

A character vector of unique ids for a subset of samples to plot

xlim

the x limits of the plot. A numeric vector of length two.

ylim

the y limits of the plot. A numeric vector of length two.

Examples

fsa_list <- lapply(cell_line_fsa_list, function(x) x$clone())
# import data with read_fsa() to generate an equivalent list to cell_line_fsa_list
fragments_list <- trace(fsa_list)

# Manually inspect the ladders
plot_ladders(fragments_list[1])