calc_esses

Calculates the Effective Sample Sizes from a parsed BEAST2 log file

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'Tracer' (<https://github.com/beast-dev/tracer/>) is a GUI tool
to parse and analyze the files generated by 'BEAST2'.
This package provides a way to parse and analyze 'BEAST2' input
files without active user input, but using
R function calls instead.

Richel Bilderbeek

tracerer

Tracer from R

Richèl J.C. Bilderbeek

Joëlle Barido-Sottani

David Winter

calc_esses function

<dl><dt>traces</dt>
<dd>a dataframe with traces with removed burn-in</dd>
<dt>sample_interval</dt>
<dd>the interval in timesteps between samples</dd></dl>

Arguments

Author

Calculates the Effective Sample Sizes from a parsed BEAST2 log file — calc_esses

<dl>

<dt>traces</dt>
<dd>a dataframe with traces with removed burn-in</dd>


<dt>sample_interval</dt>
<dd>the interval in timesteps between samples</dd>

</dl>

calc_esses: Calculates the Effective Sample Sizes from a parsed BEAST2 log file

Description

Usage

Value

Arguments

Author

Examples