extract_operators_lines

Extract the JSON lines out of a <code>.xml.state</code> with
 the unparsed BEAST2 MCMC operator acceptances
file with the operators

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'Tracer' (<https://github.com/beast-dev/tracer/>) is a GUI tool
to parse and analyze the files generated by 'BEAST2'.
This package provides a way to parse and analyze 'BEAST2' input
files without active user input, but using
R function calls instead.

Richel Bilderbeek

tracerer

Tracer from R

Richèl J.C. Bilderbeek

Joëlle Barido-Sottani

David Winter

extract_operators_lines function

<dl><dt>filename</dt>
<dd>name of the BEAST2 .xml.state output file</dd></dl>

Arguments

Author

Extract the JSON lines out of a .xml.state with
  the unparsed BEAST2 MCMC operator acceptances
file with the operators — extract_operators_lines

<dl>

<dt>filename</dt>
<dd>name of the BEAST2 .xml.state output file</dd>

</dl>

extract_operators_lines: Extract the JSON lines out of a `.xml.state` with the unparsed BEAST2 MCMC operator acceptances file with the operators

Description

Usage

Value

Arguments

Author