parse_beast_state_operators

Parses a BEAST2 state <code>.xml.state</code> output file to get only the operators
 acceptances

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'Tracer' (<https://github.com/beast-dev/tracer/>) is a GUI tool
to parse and analyze the files generated by 'BEAST2'.
This package provides a way to parse and analyze 'BEAST2' input
files without active user input, but using
R function calls instead.

Richel Bilderbeek

tracerer

Tracer from R

Richèl J.C. Bilderbeek

Joëlle Barido-Sottani

David Winter

parse_beast_state_operators function

<dl><dt>state_filename</dt>
<dd>name of the BEAST2 state <code>.xml.state</code> output file</dd>
<dt>filename</dt>
<dd>deprecated name of the BEAST2 .xml.state output file,
use <code>state_filename</code> instead</dd></dl>

Arguments

Author

Parses a BEAST2 state .xml.state output file to get only the operators
  acceptances — parse_beast_state_operators

<dl>

<dt>state_filename</dt>
<dd>name of the BEAST2 state <code>.xml.state</code> output file</dd>


<dt>filename</dt>
<dd>deprecated name of the BEAST2 .xml.state output file,
use <code>state_filename</code> instead</dd>

</dl>

parse_beast_state_operators: Parses a BEAST2 state `.xml.state` output file to get only the operators acceptances

Description

Usage

Value

Arguments

Author

Examples