save_beast_trees

Save the BEAST2 trees as a BEAST2 <code>.log</code> file.
There will be some differences: a BEAST2 <code>.log</code> file also saves
the model as comments and formats the numbers in a way non-standard to R

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'Tracer' (<https://github.com/beast-dev/tracer/>) is a GUI tool
to parse and analyze the files generated by 'BEAST2'.
This package provides a way to parse and analyze 'BEAST2' input
files without active user input, but using
R function calls instead.

Richel Bilderbeek

tracerer

Tracer from R

Richèl J.C. Bilderbeek

Joëlle Barido-Sottani

David Winter

save_beast_trees function

<dl><dt>trees</dt>
<dd>BEAST2 posterior trees, of type <code>ape::multiPhylo</code></dd>
<dt>filename</dt>
<dd>name of the <code>.trees</code> file to save to</dd></dl>

Arguments

Author

Save the BEAST2 trees as a BEAST2 .log file.
There will be some differences: a BEAST2 .log file also saves
the model as comments and formats the numbers in a way non-standard to R — save_beast_trees

<dl>

<dt>trees</dt>
<dd>BEAST2 posterior trees, of type <code>ape::multiPhylo</code></dd>


<dt>filename</dt>
<dd>name of the <code>.trees</code> file to save to</dd>

</dl>

Save the BEAST2 trees as a BEAST2 <code>.log</code> file.
There will be some differences: a BEAST2 <code>.log</code> file also saves
the model as comments and formats the numbers in a way non-standard to R

save_beast_trees: Save the BEAST2 trees as a BEAST2 `.log` file. There will be some differences: a BEAST2 `.log` file also saves the model as comments and formats the numbers in a way non-standard to R

Description

Usage

Value

Arguments

Author

See Also