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trackViewer (version 1.2.0)
A bioconductor package with minimalist design for plotting elegant track layers
Description
visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq.
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Version
1.2.0
License
GPL (>= 2)
Maintainer
Jianhong Ou
Last Published
September 21st, 2014
Functions in trackViewer (1.2.0)
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optimizeStyle
Optimize the style of plot
importScore
Reading data from a BED or WIG file
getCurTrackViewport
Get current track viewport
addGuideLine
Add guide lines to the tracks
interactiveViewer
plot the tracks with GUI
pos-class
Class
"pos"
addArrowMark
Add arrow mark to the figure at a given position
geneModelFromTxdb
Prepare gene model from an object of TxDb
importBam
Reading data from a BAM file
coverageGR
calculate coverage
viewTracks
plot the tracks
trackViewerStyle-class
Class
"trackViewerStyle"
trackViewer-package
Minimal designed plotting tool for genomic data
yaxisStyle-class
Class
"yaxisStyle"
xscale-class
Class
"xscale"
trackStyle-class
Class
"trackStyle"
trackList-class
List of tracks