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trackViewer (version 1.4.0)

A bioconductor package with minimalist design for plotting elegant track layers

Description

visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq.

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Version

Version

1.4.0

License

GPL (>= 2)

Maintainer

Jianhong Ou

Last Published

February 15th, 2017

Functions in trackViewer (1.4.0)

plotGRanges

plot GRanges data
importScore

Reading data from a BED or WIG file
interactiveViewer

plot the tracks with GUI
trackViewerStyle-class

Class "trackViewerStyle"
viewTracks

plot the tracks
getCurTrackViewport

Get current track viewport
importBam

Reading data from a BAM file
xscale-class

Class "xscale"
yaxisStyle-class

Class "yaxisStyle"
addArrowMark

Add arrow mark to the figure at a given position
addGuideLine

Add guide lines to the tracks
trackList-class

List of tracks
optimizeStyle

Optimize the style of plot
pos-class

Class "pos"
trackStyle-class

Class "trackStyle"
geneModelFromTxdb

Prepare gene model from an object of TxDb
coverageGR

calculate coverage
trackViewer-package

Minimal designed plotting tool for genomic data