RDocumentation
Moon
Learn R
Search all packages and functions
⚠️
There's a newer version (1.8.4) of this package.
Take me there.
trackViewer (version 1.4.0)
A bioconductor package with minimalist design for plotting elegant track layers
Description
visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq.
Copy Link
Copy
Link to current version
Version
Version
1.8.4
1.8.3
1.6.0
1.4.0
1.2.0
Down Chevron
Version
1.4.0
License
GPL (>= 2)
Maintainer
Jianhong Ou
Last Published
March 26th, 2015
Functions in trackViewer (1.4.0)
Search functions
plotGRanges
plot GRanges data
importScore
Reading data from a BED or WIG file
interactiveViewer
plot the tracks with GUI
trackViewerStyle-class
Class
"trackViewerStyle"
viewTracks
plot the tracks
getCurTrackViewport
Get current track viewport
importBam
Reading data from a BAM file
xscale-class
Class
"xscale"
yaxisStyle-class
Class
"yaxisStyle"
addArrowMark
Add arrow mark to the figure at a given position
addGuideLine
Add guide lines to the tracks
trackList-class
List of tracks
optimizeStyle
Optimize the style of plot
pos-class
Class
"pos"
trackStyle-class
Class
"trackStyle"
geneModelFromTxdb
Prepare gene model from an object of TxDb
coverageGR
calculate coverage
trackViewer-package
Minimal designed plotting tool for genomic data