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trackViewer (version 1.6.0)

A bioconductor package with minimalist design for plotting elegant track layers

Description

visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq.

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Version

Version

1.6.0

License

GPL (>= 2)

Maintainer

Jianhong Ou

Last Published

February 15th, 2017

Functions in trackViewer (1.6.0)

geneModelFromTxdb

Prepare gene model from an object of TxDb
importBam

Reading data from a BAM file
addGuideLine

Add guide lines to the tracks
importScore

Reading data from a BED or WIG file
coverageGR

calculate coverage
importData

Reading data from a BED or WIG file to RleList
getCurTrackViewport

Get current track viewport
GRoperator

GRanges operator
optimizeStyle

Optimize the style of plot
addArrowMark

Add arrow mark to the figure at a given position
pos-class

Class "pos"
trackList-class

List of tracks
parseWIG

convert WIG format track to BED format track
parse2GRanges

parse text into GRanges
viewTracks

plot the tracks
plotGRanges

plot GRanges data
xscale-class

Class "xscale"
trackStyle-class

Class "trackStyle"
trackViewer-package

Minimal designed plotting tool for genomic data
trackViewerStyle-class

Class "trackViewerStyle"
yaxisStyle-class

Class "yaxisStyle"