trackViewer (version 1.8.3)

coverageGR: calculate coverage

Description

calculate coverage for GRanges, GAlignments or GAlignmentPairs

Usage

coverageGR(gr)

Arguments

gr

an object of RGanges, GAlignments or GAlignmentPairs

Value

• an object of GRanges

See Also

See Also as coverage, coverage-methods

Examples

bed <- system.file("extdata", "fox2.bed", package="trackViewer",
                       mustWork=TRUE)
    fox2 <- importScore(bed)
    fox2@dat <- coverageGR(fox2@dat)