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tracktables (version 1.6.2)
Build IGV tracks and HTML reports
Description
Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.
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Version
1.6.2
1.6.0
1.4.0
1.2.3
1.0.0
Version
1.6.2
License
GPL (>= 3)
Maintainer
Tom Carroll
Last Published
February 15th, 2017
Functions in tracktables (1.6.2)
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igvParam
Parameters for displaying bigwigs, bams and intervals in IGV
MakeIGVSessionXML
Make IGV session XML
makebedtable
Make HTML pages for interval files or GRanges.
maketracktable
Make HTML pages for IGV sessions (Tracktables Experiment Report)
Intervals
Example genomic intervals
MakeIGVSession
Make IGV session XML and sample information file
MakeIGVSampleMetadata
Make sample metadata file for use with IGV.