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tractor.base (version 2.5.0)

execute: Find or run an external executable file

Description

The execute function is a wrapper around the system function in base R, which echoes the command being run (including the full path to the executable) if the reportr output level is Debug. locateExecutable simply returns the path to an executable file on the system PATH.

Usage

execute(executable, paramString = NULL, errorOnFail = TRUE, silent = FALSE, ...)
locateExecutable(fileName, errorIfMissing = TRUE)

Arguments

executable, fileName
Name of the executable to run.
paramString
A character string giving the parameters to pass to the executable, if any.
errorOnFail, errorIfMissing
Logical value: should an error be produced if the executable can't be found?
silent
Logical value: should the executable be run without any output?
...
Additional arguments to system.

Value

  • For execute, the return value of the underlying call to system. For locateExecutable, the location of the requested executable, or NULL if it could not be found.

References

Please cite the following reference when using TractoR in your work:

J.D. Clayden, S. Muñoz Maniega, A.J. Storkey, M.D. King, M.E. Bastin & C.A. Clark (2011). TractoR: Magnetic resonance imaging and tractography with R. Journal of Statistical Software 44(8):1-18. http://www.jstatsoft.org/v44/i08/.

See Also

system