plot_ci

plot.confband.tramME

Plotting method for <code>confband.tramME</code> objects.

Likelihood-based estimation of mixed-effects transformation models
using the Template Model Builder ('TMB', Kristensen et al., 2016)
<doi:10.18637/jss.v070.i05>. The technical details of transformation models
are given in Hothorn et al. (2018) <doi:10.1111/sjos.12291>. Likelihood
contributions of exact, randomly censored (left, right, interval) and
truncated observations are supported. The random effects are assumed to be
normally distributed on the scale of the transformation function, the
marginal likelihood is evaluated using the Laplace approximation, and the
gradients are calculated with automatic differentiation (Tamasi & Hothorn,
2021) <doi:10.32614/RJ-2021-075>. Penalized smooth shift terms can be
defined using 'mgcv'.

Balint Tamasi

tramME

Transformation Models with Mixed Effects

Torsten Hothorn

plot_ci function

<dl><dt>x</dt>
<dd>The object containing the confidence intervals.</dd>
<dt>col</dt>
<dd>Color of the point estimates.</dd>
<dt>lty</dt>
<dd>Line type of the point estimates.</dd>
<dt>fill</dt>
<dd>Fill color for the intervals.</dd>
<dt>add</dt>
<dd>If <code>TRUE</code>, no new plot is created, the interval is added to
the current plot.</dd>
<dt>single_plot</dt>
<dd>If <code>TRUE</code>, a single new plot is created, and all
intervals are plotted on it.</dd>
<dt>trafo_x</dt>
<dd>Transform x-axis before plotting.</dd>
<dt>trafo_y</dt>
<dd>Transform y-axis before plotting.</dd>
<dt>align_xlim</dt>
<dd>If <code>TRUE</code>, align the x-axis limits across all
subplots.</dd>
<dt>align_ylim</dt>
<dd>If <code>TRUE</code>, align the y-axis limits across all
subplots.</dd>
<dt>...</dt>
<dd>Optional arguments passed to <code><a href="/link/plot.default?package=tramME&version=1.0.7" data-mini-rdoc="tramME::plot.default">plot.default</a></code>
and <code><a href="/link/plot.xy?package=tramME&version=1.0.7" data-mini-rdoc="tramME::plot.xy">plot.xy</a></code>.</dd></dl>

Arguments

Plot confidence bands from tramME models — plot_ci

<dl>

<dt>x</dt>
<dd>The object containing the confidence intervals.</dd>


<dt>col</dt>
<dd>Color of the point estimates.</dd>


<dt>lty</dt>
<dd>Line type of the point estimates.</dd>


<dt>fill</dt>
<dd>Fill color for the intervals.</dd>


<dt>add</dt>
<dd>If <code>TRUE</code>, no new plot is created, the interval is added to
the current plot.</dd>


<dt>single_plot</dt>
<dd>If <code>TRUE</code>, a single new plot is created, and all
intervals are plotted on it.</dd>


<dt>trafo_x</dt>
<dd>Transform x-axis before plotting.</dd>


<dt>trafo_y</dt>
<dd>Transform y-axis before plotting.</dd>


<dt>align_xlim</dt>
<dd>If <code>TRUE</code>, align the x-axis limits across all
subplots.</dd>


<dt>align_ylim</dt>
<dd>If <code>TRUE</code>, align the y-axis limits across all
subplots.</dd>


<dt>...</dt>
<dd>Optional arguments passed to <code><a href='https://rdrr.io/r/graphics/plot.default.html'>plot.default</a></code>
and <code><a href='https://rdrr.io/r/graphics/plot.xy.html'>plot.xy</a></code>.</dd>

</dl>

plot_ci: Plot confidence bands from `tramME` models

Description

Usage

Arguments