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transreg (version 1.0.5)

fitted.transreg: Fitted values

Description

Extracts fitted values

Usage

# S3 method for transreg
fitted(object, stack = NULL, ...)

Value

Returns fitted values. The output is a numerical vector with one entry for sample.

Arguments

object

object of class `transreg`

stack

character "sta" (standard stacking) or "sim" (simultaneous stacking)

...

(not applicable)

References

Armin Rauschenberger, Zied Landoulsi, Mark A. van de Wiel, and Enrico Glaab (2023). "Penalised regression with multiple sets of prior effects". Bioinformatics 39(12):btad680. tools:::Rd_expr_doi("10.1093/bioinformatics/btad680"). (Click here to access PDF.)

See Also

Methods for objects of class [transreg] include coef and predict.

Examples

Run this code
#--- simulation ---
set.seed(1)
n0 <- 100; n1 <- 10000; n <- n0 + n1; p <- 500
X <- matrix(rnorm(n=n*p),nrow=n,ncol=p)
beta <- rnorm(p)
prior <- beta + rnorm(p)
y <- X %*% beta

#--- train-test split ---
foldid <- rep(c(0,1),times=c(n0,n1))
y0 <- y[foldid==0]
X0 <- X[foldid==0,]
y1 <- y[foldid==1]
X1 <- X[foldid==1,]

object <- transreg(y=y0,X=X0,prior=prior)

#--- fitted values ---
y0_hat <- fitted(object)
mean((y0-y0_hat)^2)

#--- predicted values ---
y1_hat <- predict(object,newx=X1)
mean((y1-y1_hat)^2) # increase in MSE?

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