treedata.table v0.1.0

0

Monthly downloads

0th

Percentile

Manipulation of Matched Phylogenies and Data using 'data.table'

An implementation that combines trait data and a phylogenetic tree (or trees) into a single object of class treedata.table. The resulting object can be easily manipulated to simultaneously change the trait- and tree-level sampling. Currently implemented functions allow users to use a 'data.table' syntax when performing operations on the trait dataset within the treedata.table object.

Functions in treedata.table

Name Description
[.treedata.table Function for performing data.table operations on an object of class treedata.table
[[.treedata.table Function for extract a named vector from an object of class treedata.table
as.treedata.table Combine tree (or set of trees) and data.frame into a single treedata.table object
pulltreedata.table Returns the character matrix or phylogeny from a treedata.table object
extractVector Returning a named vector from a treedata.table object
droptreedata.table Function dropping taxa from an object of class treedata.table
print.treedata.table Print method treedata.table objects
tdt Run a function on a treedata.table object
head.treedata.table Return the first part of an treedata.table object
summary.treedata.table Summarizing treedata.table objects
hasNames Row and column name check
tail.treedata.table Return the last part of an treedata.table object
filterMatrix Filter a character matrix, returning either all continuous or all discrete characters
forceNames Force names for rows, columns, or both
detectAllCharacters Apply detectCharacterType over an entire matrix
anolis Anole data
detectCharacterType Function to detect whether a character is continuous or discrete
No Results!

Vignettes of treedata.table

Name
media/Image1.png
media/Image2.png
media/Image3.png
AA_treedata.table_intro_english.Rmd
AB_treedata.table_intro_spanish.Rmd
B_multiphylo_treedata.table.Rmd
C_PartialMatching.Rmd
D_AdditionalFunctions_treedata.table.Rmd
E_Preprint.Rmd
No Results!

Last month downloads

Details

URL https://docs.ropensci.org/treedata.table/ (website) https://github.com/ropensci/treedata.table/
BugReports https://github.com/ropensci/treedata.table/issues
License MIT + file LICENSE
RoxygenNote 7.1.1
VignetteBuilder knitr
Encoding UTF-8
NeedsCompilation no
Packaged 2020-09-27 13:09:41 UTC; cristianroman
Repository CRAN
Date/Publication 2020-09-30 08:30:02 UTC

Include our badge in your README

[![Rdoc](http://www.rdocumentation.org/badges/version/treedata.table)](http://www.rdocumentation.org/packages/treedata.table)