outlierLineages

The tail probability used for classifying lineages as outliers

alpha

Should outliers be detected on tip lineages, interal lineages, or all lineages?

type

Outliers are detected using the *stats::p.adjust* function and the 'fdr' function. The test requires that *dater* was used with the temporalConstraints=TRUE.

Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. The methods are described in Volz, E.M. and S.D.W. Frost (2017) <doi:10.1093/ve/vex025>.

outlierLineages: Detect lineages with unusually large evolutionary divergence under the fitted treedater model

Description

Usage

Arguments

Value

See Also