goodnessOfFitPlot

The sorted tail probabilities (p values) for each edge in the tree under the fitted model

Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. For more details see Volz and Frost (2017) <doi:10.1093/ve/vex025>.

Erik Volz

treedater

Fast Molecular Clock Dating of Phylogenetic Trees with Rate
Variation

goodnessOfFitPlot function

<dl><dt>td</dt>
<dd>A treedater object generated by the <code>dater</code> function</dd></dl>

Arguments

Produce a goodness of fit plot — goodnessOfFitPlot

<dl>

<dt>td</dt>
<dd>A treedater object generated by the <code>dater</code> function</dd>

</dl>

goodnessOfFitPlot: Produce a goodness of fit plot

Description

Usage

Arguments