outlierTips

This is a convenient wrapper of the *outlier.lineages*

Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. For more details see Volz and Frost (2017) <doi:10.1093/ve/vex025>.

Erik Volz

treedater

Fast Molecular Clock Dating of Phylogenetic Trees with Rate
Variation

outlierTips function

<dl><dt>td</dt>
<dd>A fitted treedater object</dd>
<dt>alpha</dt>
<dd>The tail probability used for classifying lineages as outliers</dd></dl>

Arguments

Detect terminal lineages with unusually large evolutionary divergence under the fitted treedater model — outlierTips

<dl>

<dt>td</dt>
<dd>A fitted treedater object</dd>


<dt>alpha</dt>
<dd>The tail probability used for classifying lineages as outliers</dd>

</dl>

outlierTips: Detect terminal lineages with unusually large evolutionary divergence under the fitted treedater model

Description

Usage

Value

Arguments

See Also