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treediff (version 0.2.1)

Testing Differences Between Families of Trees

Description

Perform test to detect differences in structure between families of trees. The method is based on cophenetic distances and aggregated Student's tests.

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Version

Install

install.packages('treediff')

Monthly Downloads

276

Version

0.2.1

License

GPL (>= 3)

Maintainer

Nathalie Vialaneix

Last Published

February 17th, 2024

Functions in treediff (0.2.1)

normalizeCount

Normalize count matrix using cyclic loess

HiCDOCDataSet

Create a HiCDOCDataSet object from a set of files

treediff

Perform the treediff test

HiC2Tree

Convert Hi-C to trees

clusterTree

Create hierarchical clustering trees for each cluster in a given matrix