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treescape (version 1.0.0)

Statistical Exploration of Landscapes of Phylogenetic Trees

Description

Tools for the exploration of distributions of phylogenetic trees. This package includes a shiny interface which can be started from R using 'treescapeServer()'.

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Version

Install

install.packages('treescape')

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Version

1.0.0

License

GPL (>= 2)

Maintainer

Michelle Kendall

Last Published

September 11th, 2015

Functions in treescape (1.0.0)

medTree

Geometric median tree function

Identify clusters of similar trees

penEdgeTreematch

Pendant edges, matched

rcpp_hello_world

Simple function using Rcpp

woodmiceTrees

Bootstrap trees from woodmouse dataset

treescape

Phylogenetic tree exploration

treeDist

Metric function

plotGroves

Scatterplot of groups of trees

treeVec

Tree vector function

multiDist

Metric function for multiPhylo input

treescapeServer

Web-based tree explorer