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treescape (version 1.8.14)

Statistical Exploration of Landscapes of Phylogenetic Trees

Description

Tools for the exploration of distributions of phylogenetic trees. This package includes a shiny interface which can be started from R using 'treescapeServer()'.

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Version

Install

install.packages('treescape')

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Version

1.8.14

License

GPL (>= 2)

Maintainer

Michelle Kendall

Last Published

October 30th, 2015

Functions in treescape (1.8.14)

multiDist

Metric function for multiPhylo input

linearMrca

Linear MRCA function

treescape

Phylogenetic tree exploration

treeDist

Metric function

treescapeServer

Web-based tree explorer

woodmiceTrees

Bootstrap trees from woodmouse dataset

plotGroves

Scatterplot of groups of trees

medTree

Geometric median tree function

findGroves

Identify clusters of similar trees

treeVec

Tree vector function