tipsMRCAdepths

This function creates a matrix where columns 1 and 2 correspond to tip labels and column 3 gives the depth of the MRCA of that pair of tips.
It is strongly based on <code>treeVec</code> and is used by <code>relatedTreeDist</code> and <code>treeConcordance</code> where tip labels belong to "categories".

Tools for the exploration of distributions of phylogenetic trees.
This package includes a 'shiny' interface which can be started from R using
treespaceServer().
For further details see Jombart et al. (2017) <DOI:10.1111/1755-0998.12676>.

Michelle Kendall

treespace

Statistical Exploration of Landscapes of Phylogenetic Trees

Caroline Colijn

Jacob Almagro-Garcia

Thibaut Jombart

tipsMRCAdepths function

<dl><dt>tree</dt>
<dd>An object of class phylo</dd></dl>

Arguments

Tip-tip MRCA depths — tipsMRCAdepths

<dl>

<dt>tree</dt>
<dd>An object of class phylo</dd>

</dl>

tipsMRCAdepths: Tip-tip MRCA depths

Description

Usage

Arguments

Examples