treestartr (version 0.1.0)

rand_absent_tippr: Random addition of taxa

Description

Add tips not on existing tree to the tree at random, if they do not have congeners on the tree.

Usage

rand_absent_tippr(tree, absent_list, echo_subtrees = NULL,
  echo_revbayes = NULL)

Arguments

tree

Starting tree; object of type phylo

absent_list

Vector of taxa in the total dataset that are not on the tree

echo_subtrees

Boolean; Print newick subtree with missing taxa added to screen. Default FALSE.

echo_revbayes

Boolean; Print clade constraints with missing taxa added to screen, formatted for RevBayes fossilized birth-death analysis. Default FALSE.

Value

tree Phylo object containing the starting tree, and all tips that were added.

Examples

# NOT RUN {
new_tree <- rand_absent_tippr(tree, absent_list)
# }