max_betweenness

Betweenness centrality associates with each node v, the two
nodes u, w, for which the shortest path between u and w runs through v, if
the tree were re-rooted at node v. Then, we report the node with maximum
betweenness centrality.

Collection of phylogenetic tree statistics,
collected throughout the literature. All functions have been
written to maximize computation speed. The package includes
umbrella functions to calculate all statistics, all balance
associated statistics, or all branching time related statistics.
Furthermore, the 'treestats' package supports summary statistic
calculations on Ltables, provides speed-improved coding of
branching times, Ltable conversion and includes algorithms to
create intermediately balanced trees. Full description can be
found in Janzen (2024) <doi:10.1016/j.ympev.2024.108168>.

Thijs Janzen

treestats

Phylogenetic Tree Statistics

max_betweenness function

<dl><dt>phy</dt>
<dd>phylo object or ltable</dd>
<dt>normalization</dt>
<dd>"none" or "tips", if tips is chosen, the obtained
maximum betweenness is normalized by the total amount of node pair
combinations considered, e.g. (n-2)*(n-1), where n is the number of tips.</dd></dl>

Arguments

Maximum betweenness centrality. — max_betweenness

<dl>

<dt>phy</dt>
<dd>phylo object or ltable</dd>


<dt>normalization</dt>
<dd>"none" or "tips", if tips is chosen, the obtained
maximum betweenness is normalized by the total amount of node pair
combinations considered, e.g. (n-2)*(n-1), where n is the number of tips.</dd>

</dl>

max_betweenness: Maximum betweenness centrality.

Description

Usage

Value

Arguments

References