mean_pair_dist

Fast function using C++ to calculate the mean pairwise distance,
using the fast algorithm by Constantinos, Sandel &amp; Cheliotis (2012).

Collection of phylogenetic tree statistics,
collected throughout the literature. All functions have been
written to maximize computation speed. The package includes
umbrella functions to calculate all statistics, all balance
associated statistics, or all branching time related statistics.
Furthermore, the 'treestats' package supports summary statistic
calculations on Ltables, provides speed-improved coding of
branching times, Ltable conversion and includes algorithms to
create intermediately balanced trees. Full description can be
found in Janzen (2024) <doi:10.1016/j.ympev.2024.108168>.

Thijs Janzen

treestats

Phylogenetic Tree Statistics

mean_pair_dist function

<dl><dt>phy</dt>
<dd>phylo object or ltable</dd>
<dt>normalization</dt>
<dd>"none" or "tips", in which case the obtained mean
pairwise distance is normalized by the factor 2log(n),
where n is the number of tips.</dd></dl>

Arguments

Mean Pairwise distance — mean_pair_dist

<dl>

<dt>phy</dt>
<dd>phylo object or ltable</dd>


<dt>normalization</dt>
<dd>"none" or "tips", in which case the obtained mean
pairwise distance is normalized by the factor 2log(n),
where n is the number of tips.</dd>

</dl>

mean_pair_dist: Mean Pairwise distance

Description

Usage

Value

Arguments

References