treestructure (version 0.7.0)

plot.TreeStructure: Plot TreeStructure tree with cluster and partition variables

Description

Plot TreeStructure tree with cluster and partition variables

Usage

# S3 method for TreeStructure
plot(x, use_ggtree = TRUE, ...)

Arguments

x

A TreeStructure object

use_ggtree

Toggle ggtree or ape plotting behavior

...

Additional arguments passed to ggtree or ape::plot.phylo

Examples

#tree <- ape::read.tree( system.file('sim.nwk', package = 'treestructure') )
# you can run the example below before plotting
#struc <- trestruct( tree )

#because it can take a minute or so to run treestructure, we will load it here
struc <- readRDS( system.file('struc_plot_example.rds', package='treestructure') )
#plot treestructure object

suppressWarnings(plot(struc))